Recology

An exploration of using R for ecology, evolution, and open science.

  1. chinese economy

    Posted in  misc

    Author 

    26 May 2012

  2. songs

    Posted in  music

    Author 

    10 May 2012

  3. becoz i love u

    Posted in  music

    Author 

    10 May 2012

  4. Visualize your Github stats (forks and watchers) in a browser with R!

    Posted in  datavisualization ggplot2 opencpu.org github

    Author  Scott Chamberlain

    05 May 2012

  5. mvabund - new R pkg for multivariate abundance data

    Posted in  datavisualization abundance R

    Author  Scott Chamberlain

    19 Mar 2012

  6. Journal Articles Need Interactive Graphics

    Posted in  datavisualization publishing interactivegraphics

    Author  Pascal Mickelson

    25 Feb 2012

  7. Take the INNGE survey on math and ecology

    Posted in  R math statistics ecology

    Author  Scott Chamberlain

    17 Feb 2012

  8. Scraping Flora of North America

    Posted in  R scraping

    Author  Scott Chamberlain

    27 Jan 2012

  9. RNetLogo - A package for running NetLogo from R

    Posted in  NetLogo R

    Author  Scott Chamberlain

    23 Jan 2012

  10. Taking a Closer Look at Peer Review

    Posted in  thoughts publishing peerreview

    Author  Pascal Mickelson

    16 Jan 2012

  11. Function for phylogeny resolution

    Posted in  R ape phylogenetics

    Author  Scott Chamberlain

    13 Jan 2012

  12. Moving from blogger and wordpress to jekyll

    Posted in  thoughts blogger wordpress jekyll

    Author  Scott Chamberlain

    11 Jan 2012

  13. Presenting results of logistic regression

    Posted in  ggplot2 gridExtra R

    Author  Scott Chamberlain

    10 Jan 2012

  14. Testing twitterfeed

    Posted in 

    Author  Scott Chamberlain

    08 Jan 2012

  15. Testing new website

    Posted in 

    Author  Scott Chamberlain

    06 Jan 2012

  16. Weecology can has new mammal dataset

    Posted in  Datasets ggplot2 plyr R ropensci stringr treebase weecology

    Author  Scott Chamberlain

    29 Dec 2011

  17. Recology is 1 yr old

    Posted in  ggplot2 Evolution Ecology R

    Author  Scott Chamberlain

    23 Dec 2011

  18. Dynamic views don't support javascript-so reverting back to simple views

    Posted in 

    Author  Scott Chamberlain

    22 Dec 2011

  19. I Work For The Internet !

    Posted in  lubridate ggplot2 twitteR plyr R

    Author  Scott Chamberlain

    13 Dec 2011

  20. LondonR meetings presentations

    Posted in  segue LondonR EC2 R

    Author  Scott Chamberlain

    11 Dec 2011

  21. rOpenSci won 3rd place in the PLoS-Mendeley Binary Battle!

    Posted in  packages rmendeley openaccess ropensci rplos R

    Author  Scott Chamberlain

    30 Nov 2011

  22. Public vote open for Mendely-PLoS Binary Battle: vote rOpenSci!

    Posted in 

    Author  Scott Chamberlain

    19 Nov 2011

  23. My talk on doing phylogenetics in R

    Posted in  packages phylocom tutorials phangorn Phylogenetics R geiger ggplot2 Evolution ape phytools Picante sciencetalks

    Author  Scott Chamberlain

    18 Nov 2011

  24. Check out a video of my research at RocketHub

    Posted in  begging

    Author  Scott Chamberlain

    01 Nov 2011

  25. My little presentation on getting web data through R

    Posted in  ggplot2 tutorials API codedev sciencetalks R ITIS Datasets

    Author  Scott Chamberlain

    28 Oct 2011

  26. Two new rOpenSci R packages are on CRAN

    Posted in  packages Ecology codedev R

    Author  Scott Chamberlain

    27 Oct 2011

  27. Two-sex demographic models in R

    Posted in  Papers Ecology R

    Author  Scott Chamberlain

    26 Oct 2011

  28. New food web dataset

    Posted in  ggplot2 Networks igraph R

    Author  Scott Chamberlain

    14 Oct 2011

  29. Phylogenetic community structure: PGLMMs

    Posted in  Evolution Papers Ecology Statistics Picante R

    Author  Scott Chamberlain

    13 Oct 2011

  30. R talk on regular expressions (regex)

    Posted in  regex sciencetalks R

    Author  Scott Chamberlain

    06 Oct 2011

  31. R tutorial on visualizations/graphics

    Posted in  tutorials sciencetalks R

    Author  Scott Chamberlain

    30 Sep 2011

  32. Short on funding? Can't get a grant? Crowdfunding! #SciFund

    Posted in  crowdfunding

    Author  Scott Chamberlain

    27 Sep 2011

  33. Ten Simple Rules for OA Publishers talk by Philip Bourne

    Posted in  openaccess sciencetalks

    Author  Scott Chamberlain

    23 Sep 2011

  34. @drewconway interview on @DataNoBorders at the Strata conference

    Posted in  openaccess API DataWithoutBorders sciencetalks

    Author  Scott Chamberlain

    22 Sep 2011

  35. Open science talk by Carl Boettiger

    Posted in  openaccess Evolution Ecology sciencetalks

    Author  Scott Chamberlain

    22 Sep 2011

  36. My take on an R introduction talk

    Posted in  openaccess Methods sciencetalks R

    Author  Scott Chamberlain

    09 Sep 2011

  37. A Data Visualization Book

    Posted in 

    Author  Scott Chamberlain

    08 Sep 2011

  38. FigShare Talk

    Posted in  openaccess vime sciencetalks

    Author  Scott Chamberlain

    08 Sep 2011

  39. Jonathan Eisen on the Fourth Domain and Open Science

    Posted in  vimeo Evolution Phylogenetics sciencetalks

    Author  Scott Chamberlain

    06 Sep 2011

  40. rnpn: An R interface for the National Phenology Network

    Posted in  ropensci API Ecology R Datasets

    Author  Scott Chamberlain

    31 Aug 2011

  41. Tenure track position in systematics at the University of Vermont

    Posted in  Evolution jobs Phylogenetics R

    Author  Scott Chamberlain

    22 Aug 2011

  42. Thursday at #ESA11

    Posted in  Meetings Evolution Ecology sciencetalks

    Author  Scott Chamberlain

    12 Aug 2011

  43. Wednesday at #ESA11

    Posted in  openaccess Meetings Evolution Ecology sciencetalks

    Author  Scott Chamberlain

    11 Aug 2011

  44. Monday at #ESA11

    Posted in  openaccess Meetings Evolution Ecology sciencetalks

    Author  Scott Chamberlain

    08 Aug 2011

  45. (#ESA11) rOpenSci: a collaborative effort to develop R-based tools for facilitating Open Science

    Posted in  openaccess Evolution API Ecology R Datasets

    Author  Scott Chamberlain

    08 Aug 2011

  46. Blogging/tweeting from #ESA11

    Posted in  openaccess Meetings Ecology sciencetalks

    Author  Scott Chamberlain

    31 Jul 2011

  47. Models in Evolutionary Ecology seminar, organized by Timothee Poisot

    Posted in  Meetings Evolution Ecology sciencetalks

    Author  Scott Chamberlain

    18 Jul 2011

  48. Archiving ecology/evolution data sets online

    Posted in  openaccess Datasets

    Author  Scott Chamberlain

    15 Jul 2011

  49. CRdata vs. Cloudnumbers

    Posted in  cloudcomputing R

    Author  Scott Chamberlain

    14 Jul 2011

  50. rbold: An R Interface for Bold Systems barcode repository

    Posted in  openaccess API R Datasets

    Author  Scott Chamberlain

    28 Jun 2011

  51. iEvoBio 2011 Synopsis

    Posted in  openaccess Meetings Methods Ecology Phylogenetics R Datasets

    Author  Scott Chamberlain

    22 Jun 2011

  52. PLoS journals API from R: "rplos"

    Posted in  openaccess API Papers R

    Author  Scott Chamberlain

    21 Jun 2011

  53. ggplot2 talk by Hadley Whickam at Google

    Posted in  ggplot2 Statistics plyr reshape2

    Author  Scott Chamberlain

    17 Jun 2011

  54. OpenStates from R via API: watch your elected representatives

    Posted in  R Datasets

    Author  Scott Chamberlain

    10 Jun 2011

  55. Just turned on 'mobile template' for this blog, let me know if it works

    Posted in 

    Author  Scott Chamberlain

    09 Jun 2011

  56. > 10,000 visits to Recology!!!!

    Posted in 

    Author  Scott Chamberlain

    09 Jun 2011

  57. How to fit power laws

    Posted in  Methods Papers Statistics R

    Author  Scott Chamberlain

    07 Jun 2011

  58. searching ITIS and fetching Phylomatic trees

    Posted in  Phylogenetics taxize R ITIS

    Author  Scott Chamberlain

    03 Jun 2011

  59. phylogenetic signal simulations

    Posted in  ggplot2 ape Phylogenetics

    Author  Scott Chamberlain

    18 May 2011

  60. A simple function for plotting phylogenies in ggplot2

    Posted in  ggplot2 Phylogenetics R

    Author  Scott Chamberlain

    17 May 2011

  61. plyr's idata.frame VS. data.frame

    Posted in  plyr R

    Author  Scott Chamberlain

    13 May 2011

  62. google reader

    Posted in 

    Author  Scott Chamberlain

    12 May 2011

  63. Comparison of functions for comparative phylogenetics

    Posted in  Evolution ape Phylogenetics R motmot

    Author  Scott Chamberlain

    11 May 2011

  64. RHIPE package in R for interfacing between Hadoop and R

    Posted in  Methods

    Author  Scott Chamberlain

    04 May 2011

  65. Treebase trees from R

    Posted in  Phylogenetics R

    Author  Scott Chamberlain

    03 May 2011

  66. Processing nested lists

    Posted in  R

    Author  Scott Chamberlain

    28 Apr 2011

  67. Running Phylip's contrast application for trait pairs from R

    Posted in  Phylogenetics R

    Author  Scott Chamberlain

    26 Apr 2011

  68. Phylometa from R: Randomization via Tip Shuffle

    Posted in  meta-analysis Methods Evolution Phylogenetics R

    Author  Scott Chamberlain

    16 Apr 2011

  69. RStudio Beta 2 is Out!

    Posted in 

    Author  Scott Chamberlain

    11 Apr 2011

  70. Adjust branch lengths with node ages: comparison of two methods

    Posted in  phylocom Methods Evolution Phylogenetics R

    Author  Scott Chamberlain

    10 Apr 2011

  71. Phylometa from R - UDPATE

    Posted in  ggplot2 meta-analysis Phylogenetics R

    Author  Scott Chamberlain

    01 Apr 2011

  72. Bio-ORACLE

    Posted in 

    Author  Scott Chamberlain

    25 Mar 2011

  73. basic ggplot2 network graphs - ver2

    Posted in  ggplot2 bipartite Networks igraph R

    Author  Scott Chamberlain

    23 Mar 2011

  74. basic ggplot2 network graphs

    Posted in  ggplot2 bipartite Networks igraph R

    Author  Scott Chamberlain

    17 Mar 2011

  75. Species abundance distributions and basketball

    Posted in  Papers Ecology

    Author  Scott Chamberlain

    13 Mar 2011

  76. cloudnumbers.com

    Posted in  Methods

    Author  Scott Chamberlain

    11 Mar 2011

  77. Five ways to visualize your pairwise comparisons

    Posted in  ggplot2 Methods lattice car R

    Author  Scott Chamberlain

    05 Mar 2011

  78. Check out Phyloseminar.org

    Posted in  Evolution Phylogenetics

    Author  Scott Chamberlain

    04 Mar 2011

  79. RStudio

    Posted in 

    Author  Scott Chamberlain

    28 Feb 2011

  80. R overtakes SAS in popularity

    Posted in 

    Author  Scott Chamberlain

    25 Feb 2011

  81. Phenotypic selection analysis in R

    Posted in  Methods Evolution R

    Author  Scott Chamberlain

    24 Feb 2011

  82. Phylogenetic analysis with the phangorn package: an example

    Posted in  Evolution Papers phangorn Phylogenetics R

    Author  Scott Chamberlain

    21 Feb 2011

  83. Farmer's markets data

    Posted in  ggplot2 Datasets

    Author  Scott Chamberlain

    16 Feb 2011

  84. Troubling news for the teaching of evolution

    Posted in  ggplot2 Policy Evolution Ecology plyr R Datasets

    Author  Scott Chamberlain

    09 Feb 2011

  85. Plants are less sex deprived when next to closely related neighbors

    Posted in 

    Author  Scott Chamberlain

    01 Feb 2011

  86. Good riddance to Excel pivot tables

    Posted in  plyr reshape2 R

    Author  Scott Chamberlain

    30 Jan 2011

  87. R and Google Visualization API: Fish harvests

    Posted in  ggplot2 Ecology GoogleVis R Datasets

    Author  Scott Chamberlain

    17 Jan 2011

  88. R and Google Visualization API: Wikispeedia

    Posted in  GoogleVis R

    Author  Scott Chamberlain

    17 Jan 2011

  89. Bipartite networks and R

    Posted in  Networks R

    Author  Scott Chamberlain

    14 Jan 2011

  90. Just for fun: Recovery.gov data snooping

    Posted in  ggplot2 R Datasets

    Author  Scott Chamberlain

    11 Jan 2011

  91. R and Google Visualization API

    Posted in  Ecology GoogleVis R

    Author  Scott Chamberlain

    08 Jan 2011

  92. Ecological networks from abundance distributions

    Posted in  Ecology Networks R

    Author  Scott Chamberlain

    06 Jan 2011

  93. R-bloggers

    Posted in  R

    Author  Scott Chamberlain

    05 Jan 2011

  94. New approach to analysis of phylogenetic community structure

    Posted in  Evolution Papers Ecology Phylogenetics Picante R

    Author  Scott Chamberlain

    05 Jan 2011

  95. Ngram ecological terms

    Posted in 

    Author  Scott Chamberlain

    29 Dec 2010

  96. Phylogenetic meta-analysis in R using Phylometa

    Posted in  ggplot2 Evolution Ecology Phylogenetics R

    Author  Scott Chamberlain

    28 Dec 2010

  97. A new blog about using R for ecology and evolution

    Posted in  Evolution Ecology R

    Author  Scott Chamberlain

    27 Dec 2010

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