The Cerebral Mastication blog has a nice list of R resources (http://www.cerebralmastication.com/r-resources/)
Pairach Piboonrungroj has a nice list of R tutorials (here/)
The Ecostudies blog R tricks (http://pvanb.wordpress.com/links-2/r-tips-tricks/)
Get R here
http://cran.r-project.org/
R IDE's, text editors (w/ plugins for R), and R environments (...not an exhaustive list)
RStudio: http://www.rstudio.org/
Tinn-R: http://www.sciviews.org/Tinn-R/
StatET: http://www.walware.de/goto/statet
Eclipse: http://www.eclipse.org/
R Commander: http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/
JGR: http://cran.r-project.org/web/packages/JGR/index.html
Deducer: http://www.deducer.org/pmwiki/pmwiki.php?n=Main.DeducerManual
Rattle: http://rattle.togaware.com/
RedR: http://www.red-r.org/
TextWrangler: http://www.barebones.com/products/textwrangler/
Notepad++: http://notepad-plus-plus.org/, with Npp2r plugin: http://sourceforge.net/projects/npptor/
R help
Sign up for R-help mailing list here: https://stat.ethz.ch/mailman/listinfo/r-help
-remember to read the posting guide before posting to the listserve
See here for R-help phylogenetics: https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
See here for R-help ecology: https://stat.ethz.ch/mailman/listinfo/r-sig-ecology
See here for R-help on mixed effects models: https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
See here for R-help on networks/graphs: https://stat.ethz.ch/mailman/listinfo/r-sig-networks
[all R-help listserves: https://stat.ethz.ch/mailman/listinfo/]
Stackoverflow: http://stackoverflow.com/
The R Journal: http://journal.r-project.org/
Google groups, ggplot2: http://groups.google.com/group/ggplot2?pli=1
R Graphical Manual: http://rgm2.lab.nig.ac.jp/RGM2/images.php?show=all&pageID=935
R Bloggers: http://www.r-bloggers.com/
R Graph Gallery: http://addictedtor.free.fr/graphiques/
Examples of figures in both Lattice and ggplot2: http://learnr.files.wordpress.com/2009/08/latbook_time1.pdf
Quick R: http://www.statmethods.net/index.html
CrossValidated: http://stats.stackexchange.com/
R Inferno (pdf document): http://www.burns-stat.com/pages/Tutor/R_inferno.pdf
Hadley Whickam's short courses: http://courses.had.co.nz/
Phylogenetics
R phylogenetics Wiki: http://www.r-phylo.org/wiki/HowTo/Table_of_Contents
Bodega Phylogenetics Wiki: http://bodegaphylo.wikispot.org/Front_Page
-Phylogenetic signal: http://bodegaphylo.wikispot.org/IV._Testing_Phylogenetic_Signal_in_R
-Morphological Evolution: http://bodegaphylo.wikispot.org/Morphological_evolution_in_R
-Brownie (Brian O'Meara's program) tutorial: http://bodegaphylo.wikispot.org/Morphological_Diversification_and_Rates_of_Evolution
Phyloseminar.org: http://phyloseminar.org/
Liam Revell's blog Phylogenetic Tools for Comparative Biology: http://phytools.blogspot.com/2011/03/creating-star-phylogeny.html
Dechronization blog: http://treethinkers.blogspot.com/
R syntax highlighting for your blog!
Pretty R: http://www.inside-r.org/pretty-r/tool
10 tips for making the best R graphics
http://blog.revolutionanalytics.com/2009/01/10-tips-for-making-your-r-graphics-look-their-best.html
Comparison of data aggregation packages
http://zvfak.blogspot.com/2011/03/applying-functions-on-groups-sqldf-plyr.html
